HarmoniSV

A toolkit to harmonize and filter structural variations across methods and samples.

Last updated: 2025-03-14

Features

• Harmonize SVs discovered by different SV calling methods
• Filter high-confidence SVs with a random forest classifier
• Fast VCF manipulation, annotation, and conversion

Important

The documentation for below commands are ready now:

• harmonize-header
• harmonize
• represent
• genotype

For other commands, please type harmonisv <command> -h to get help. I am simplifying the input format and command line options for other commands. The documentation will be updated after that.

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